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SingleCAnalyzer is a free cloud platform for the analysis of single-cell RNA-seq data. It provides a full analysis from sequence files (FASTQ) with the application of state-of-the art analysis methods.
Our analysis pipeline applies a confident protocol which avoids the need for configuration using complex parameters. It performs a quick and semiautomated analysis which does not require the installation of software on your computer.
Self-exploratory and Interactive Results
The analysis pipeline includes:
- Alignment of FASTQ files
- Read trimming
- Quality control of samples
- Feature selection
- Cell classification
- Dimensional reduction
- Unsupervised clustering of samples
- Expression comparison between groups
- Functional enrichment of differential genes
- Gene set expression analyses (GSEA)